PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19981.2 Da    PI: 7.9164
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-112064650
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +tf+k ++ i+ KA+ELS+ ++aev +++f ++ k y+y 
  XP_009785023.1 20 MVECLTTFAKTKAIIFIKAHELSITTGAEVGLLLFCPSEKTYTYG 64
                    556679*************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.909767IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-9766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-14996IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-8929IPR002100Transcription factor, MADS-box
PfamPF003198.6E-102563IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAKNKSLSRK KAQIKALESM VECLTTFAKT KAIIFIKAHE LSITTGAEVG LLLFCPSEKT  60
YTYGSPRNFD AIADKFLNLK LNDGKNNYSD IVESNCNKEF ERLIVQKAKL EKLLDIIQEI  120
LNLSTSPNFV ALRPSSSEES CVMNDLNVVA NADGGILLQL INWRPLSVVT REEFIQFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785023.11e-128PREDICTED: agamous-like MADS-box protein AGL3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-12AGAMOUS-like 64